PROFESSIONAL EXPERIENCE
PUBLICATIONS
Papers
Oh HM, Giovannoni SJ, Lee K, Ferriera S, Johnson J, Cho JC. “Complete Genome Sequence of Robiginitalea biformata HTCC2501.” J Bacteriol. 2009 Sep 18.
Federico M. Lauro, Diane McDougald, Torsten Thomas, Timothy J. Williams, Suhelen Egan, Scott Rice,
Matthew Z. DeMaereb, Lily Tingb, Haluk Ertanb, Justin Johnson, Steven Ferriera, Alla Lapidus, Iain Anderson, Nikos Kyrpides, A. Christine Munk, Chris Detter, Cliff S. Hang, Mark V. Brown, Frank T. Robb, Staffan Kjelleberg and Ricardo Cavicchioli. “The genomic basis of trophic strategy in marine bacteria”. PNAS September 15, 2009 vol. 106 no. 37 15527-15533
Oh HM, Giovannoni SJ, Ferriera S, Johnson J, Cho JC. “Complete genome sequence of Erythrobacter litoralis HTCC2594.” J Bacteriol. 2009 Apr;191(7):2419-20. Epub 2009 Jan 23.
Arthur L. Delcher, Sergey Koren, Jason R. Miller, Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, and Granger Sutton. "Aggressive Assembly of Pyrosequencing Reads with Mates. Bioinformatics. October 24, 2008.
Torsten Thomas, Flavia F Evans, David Schleheck, Anne Mai-Prochnow, Catherine Burke, Anahit Penesyan, Doralyn S Dalisay, Sacha Stelzer-Braid, Neil Saunders, Justin Johnson, Steve Ferriera, Staffan Kjelleberg, Suhelen Egan. "Analysis of the Pseudoalteromonas tunicata Genome Reveals Properties of a Surface-Associated Life Style in the Marine Environment", PLoS ONE. 2008; 3(9): e3252., September 24th 2008
Ivars-Martinez E, Martin-Cuadrado AB, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R, Rodriguez-Valera F. "Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter", ISME, July 2008
Dufresne A, Ostrowski M, Scanlan DJ, Garczarek L, Mazard S, Palenik BP, Paulsen IT, de Marsac NT, Wincker P, Dossat C, Ferriera S, Johnson J, Post AF, Hess WR, Partensky F. "Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria", Genome Biology, May 28, 2008
Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, Johnson, J., et al. (2007) "Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus." PLoS Genet 3(12): e231. doi:10.1371/journal.pgen.0030231
Fuchs BM, Spring S, Teeling H, Quast C, Wulf J, Schattenhofer M, Yan S, Ferriera S, Johnson J, Glöckner FO, Amann R., Proc Natl Acad Sci U S A. "Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis." 2007 Feb 20;104(8):2891-6. Epub 2007 Feb 13.
Venkatesh, B., Kirkness, E.F., Loh, Y.H., Halpern, A.L., Lee, A.P., Johnson, J., Dandona, N., Viswanathan, L.D., Tay, A., Venter, J.C., Strausberg, R.L. and Brenner, S. "Ancient noncoding elements conserved in the human genome." 2006. Science 314, 1892.
Venkatesh, B., Kirkness, E.F., Loh, Y.H., Halpern, A.L., Lee, A.P., Johnson, J., Dandona, N., Viswanathan, L.D., Tay, A., Venter, J.C., Strausberg, R.L. and Brenner, S. "Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. 2007. PLoS Biol.
Bernhard M. Fuchs, Stefan Spring, Hanno Teeling, Christian Quast, Jörg Wulf, Martha, Schattenhofer, Shi Yan, Steve Ferriera, Justin Johnson, Frank Oliver Glöckner, Rudolf Amann. "Whole genome analysis of Congregibacter litoralis strain KT71, the first cultured aerobic gammaproteobacterium capable of anoxygenic Photosynthesis". PLOS. September 2006.
S.M.D. Goldberg*, J. Johnson*, D. Busam, T. Feldblyum, S. Ferriera, R. Friedman, A. Halpern, H. Khoudri, S. Kravitz, F.M. Lauro, K. Li, Y.H. Rogers, R. Strausberg, G. Sutton, L. Tallon, T. Thomas, E. Venter, M. Frazier, J.C. Venter, "A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes" PNAS. July 25, 2006. *Contributed Equally
Consortium. "The Genome of the African Trypanosome Trypanosoma brucei." Science, Vol 309, Issue 5733, 416-422. 15 July 2005.
Posters
Federico M. Lauro, Justin Johnson & Douglas H. Bartlett
“Genomic perspectives in piezomicrobiology,” Poster, The First Annual International Conference of Metagenomics, University of California, San Diego, October 3-5, 2006
J. Johnson, S. Goldberg, D. Busam, S. Ferriera, R. Friedman, M. Frazier, A. Halpern, S. Kravitz, K. Li, Y.H. Rogers, R. Strausberg, G. Sutton, E. Venter, and J.C. Venter
“A Sanger/Pyrosequencing Hybrid Approach for Generation of High Quality Draft Assemblies of Marine Microbial Genomes,” Poster, GMEC 2006: Genomes, Medicine and the Environment, (Hilton Head Island, South Carolina), October 16-18, 2006.
Steven Ferriera, Justin Johnson, Bob Friedman, Marv Frazier, Yu-Hui Rogers, Saul Kravitz, and J. Craig Venter
“The Gordon and Betty Moore Foundation Microbial Genome Sequencing Project,” Poster, GMEC 2006: Genomes, Medicine and the Environment, (Hilton Head Island, South Carolina), October 16-18, 2006.
Nicholas Judson, John I. Glass, Aaron L. Halpern, Jason Freeman, Cynthia Andrews-Pfannkoch, Lakshmi Viswanathan, Karen Y. Beeson, Bao Tran, Shibu Yooseph, Shannon Williamson, Douglas B. Rusch, Justin Johnson, Yann Palmore, Yu-Hui Rogers, Robert Friedman, J. Craig Venter
“Metagenomic Determination of the Microbial Composition of Air in New York City,” Poster, GMEC 2006: Genomes, Medicine and the Environment, (Hilton Head Island, South Carolina), October 16-18, 2006.
Brian E. Blanton, Justin Johnson, John Gill, Granger Sutton, Yu-Hui Rogers and J. Craig Venter
“Maximizing Sequencing Throughput and Efficiency of Microbial Genomes on Applied Biosystem's 3730xl,” Poster, GMEC 2006: Genomes, Medicine and the Environment, (Hilton Head Island, South Carolina), October 16-18, 2006.
Steven Ferriera, Justin Johnson, Shannon Williamson, Karen Yadvish Beeson, Dana Busam, Bao Tran, Yu-Hui Rogers, Robert Friedman, Saul Kravitz, and J. Craig Venter
“The Gordon and Betty Moore Foundation Microbial Genome Sequencing Project,” Poster, ISME, Vienna Austria, August 17-22, 2006.
Bernhard M. Fuchs, Stefan Spring, Hanno Teeling, Christian Quast, Jörg Wulf, Martha, Schattenhofer, Shi Yan, Steve Ferriera, Justin Johnson, Frank Oliver Glöckner, Rudolf Amann
“Genomic analysis of Congregibacter litoralis strain KT71, the first cultured aerobic gammaproteobacterium capable of anoxygenic Photosynthesis,” Poster, Gordon Research Conference on Marine Microbes 2006, Maine, July 23-28 2006